ELSCINT1WaveToText.cxx

/*=========================================================================

  Program: GDCM (Grassroots DICOM). A DICOM library

  Copyright (c) 2006-2011 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
#include "gdcmReader.h"
#include "gdcmPrivateTag.h"

/*
 * This example shows how to read a Wave Information tag from ELSCINT1
 * The wave information is stored in Tag (01e1,18,ELSCINT1) hidden in a
 * Secondary Capture Image Storage (usually a 'N' Symbol is shown)
 *
 * Everything done in this code is for the sole purpose of writing interoperable
 * software under Sect. 1201 (f) Reverse Engineering exception of the DMCA.
 * If you believe anything in this code violates any law or any of your rights,
 * please contact us (gdcm-developers@lists.sourceforge.net) so that we can
 * find a solution.
 *
 * Everything you do with this code is at your own risk, since decompression
 * algorithm was not written from specification documents.
 *
 * Special thanks to:
 * Gauthier Bouilhol
 */

template <typename T>
bool dumpargs(std::ostream & os, T c1, T c2, T c3, T c4, T c5, T c6, T c7, T c8)
{
  static const char sep = '\t';
  os << c1 << sep << c2 << sep << c3 << sep << c4 << sep << c5 << sep << c6 << sep << c7 << sep << c8;
  os << std::endl;
  return true;
}

bool wave2stream( std::ostream &text_file, const char *in, size_t len )
{
  short * buffer = (short*)in;
  size_t length = len / sizeof( short );
  text_file << "COMPLETE_WAVE" << '\t' << "MASK"       << '\t' << "AQUISITION_PROFIL" << '\t' << "END-INHALE" << '\t' << "END-EXHALE" << '\t' << "AQUISITION_WAVE" << '\t' << "WAVE_STATISTICS" << '\t' << "MASK"        << std::endl;
  for (size_t i=0;i<length-76;i+=2)
    {
    if ( i < 74 )
      {
      if (buffer[i+75] == 0)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 0                   << '\t' << "  "         << '\t' << "  "         << '\t' << "  "              << '\t' << buffer[i]         << '\t' << buffer[i+1] << std::endl;
      if (buffer[i+75] == 16384)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 0                   << '\t' << buffer[i+74] << '\t' << "  "         << '\t' << "  "              << '\t' << buffer[i]         << '\t' << buffer[i+1] << std::endl;
      if (buffer[i+75] == 256)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 0                   << '\t' << "  "         << '\t' << buffer[i+74] << '\t' << "  "              << '\t' << buffer[i]         << '\t' << buffer[i+1] << std::endl;
      if (buffer[i+75] == -32768)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 1                   << '\t' << "  "         << '\t' << "  "         << '\t' << buffer[i+74]      << '\t' << buffer[i]         << '\t' << buffer[i+1] << std::endl;
      if (buffer[i+75] == -16384)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 1                   << '\t' << buffer[i+74] << '\t' << "  "         << '\t' << buffer[i+74]      << '\t' << buffer[i]         << '\t' << buffer[i+1] << std::endl;
      if (buffer[i+75] == -32512)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 1                   << '\t' << "  "         << '\t' << buffer[i+74] << '\t' << buffer[i+74]      << '\t' << buffer[i]         << '\t' << buffer[i+1] << std::endl;
      }
    else
      {
      if (buffer[i+75] == 0)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 0                   << '\t' << "  "         << '\t' << "  "         << '\t' << "  "              << '\t' << "  "              << '\t' << "  "        << std::endl;
      if (buffer[i+75] == 16384)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 0                   << '\t' << buffer[i+74] << '\t' << "  "         << '\t' << "  "              << '\t' << "  "              << '\t' << "  "        << std::endl;
      if (buffer[i+75] == 256)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 0                   << '\t' << "  "         << '\t' << buffer[i+74] << '\t' << "  "              << '\t' << "  "              << '\t' << "  "        << std::endl;
      if (buffer[i+75] == -32768)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 1                   << '\t' << "  "         << '\t' << "  "         << '\t' << buffer[i+74]      << '\t' << "  "              << '\t' << "  "        << std::endl;
      if (buffer[i+75] == -16384)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 1                   << '\t' << buffer[i+74] << '\t' << "  "         << '\t' << buffer[i+74]      << '\t' << "  "              << '\t' << "  "        << std::endl;
      if (buffer[i+75] == -32512)
        text_file << buffer[i+74]    << '\t' << buffer[i+75] << '\t' << 1                   << '\t' << "  "         << '\t' << buffer[i+74] << '\t' << buffer[i+74]      << '\t' << "  "              << '\t' << "  "        << std::endl;
      }
    }

  return true;
}

int main(int argc, char *argv [])
{
  if( argc < 3 ) return 1;
  const char *filename = argv[1];
  const char *outfilename = argv[2];
  gdcm::Reader reader;
  reader.SetFileName( filename );
  if( !reader.Read() )
    {
    std::cerr << "Failed to read: " << filename << std::endl;
    return 1;
    }
  const gdcm::DataSet& ds = reader.GetFile().GetDataSet();

  const gdcm::PrivateTag twave(0x01e1,0x18,"ELSCINT1");
  if( !ds.FindDataElement( twave ) ) return 1;
  const gdcm::DataElement& wave = ds.GetDataElement( twave );
  if ( wave.IsEmpty() ) return 1;
  const gdcm::ByteValue * bv = wave.GetByteValue();
  assert( bv );

  std::ofstream os( outfilename );
  // Dump that to a CSV file:
  wave2stream( os, bv->GetPointer(), bv->GetLength() );
  os.close();

  return 0;
}